Package index
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PBT_gmt - PBT gene sets related to kidney transplant
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baduel_5gs - Small portion of RNA-seq data from plant physiology study.
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dear_seq() - Differential expression analyis of RNA-seq data through a variance component test
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dearseqdearseq-package - dearseq: Differential Expression Analysis for RNA-seq data through a robust variance component test
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dgsa_seq() - Time-course Gene Set Analysis
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permPvals() - Exact permutation p-values
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plot(<dearseq>) - Plot method for dearseq objects
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plot_hist_pvals() - Plotting raw p-values histogram
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plot_ord_pvals() - Plot of gene-wise p-values
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plot_weights() - Plotting mean-variance fit for precision weights estimation
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sp_weights() - Non parametric local heteroscedasticity weights
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spaghettiPlot1GS() - Spaghetti plot for Specific Gene Set
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summary(<dearseq>)print(<summary.dearseq>) - Summary method for dearseq objects
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vc_test_asym() - Asymptotic variance component test statistic and p-value
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vc_test_perm() - Permutation-based variance component test statistic and p-value
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voom_weights() - Precision weights accounting for heteroscedasticity in RNA-seq count data